CDS

Accession Number TCMCG057C46040
gbkey CDS
Protein Id XP_018450085.1
Location complement(join(18957695..18958660,18958829..18958996))
Gene LOC108821580
GeneID 108821580
Organism Raphanus sativus

Protein

Length 377aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018594583.1
Definition PREDICTED: protein PELOTA 2-like isoform X3 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category J
Description May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
KEGG_ko ko:K06965        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03015        [VIEW IN KEGG]
map03015        [VIEW IN KEGG]
GOs GO:0000956        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006402        [VIEW IN EMBL-EBI]
GO:0006412        [VIEW IN EMBL-EBI]
GO:0006518        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0016075        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0022411        [VIEW IN EMBL-EBI]
GO:0032790        [VIEW IN EMBL-EBI]
GO:0032984        [VIEW IN EMBL-EBI]
GO:0032988        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0034661        [VIEW IN EMBL-EBI]
GO:0043021        [VIEW IN EMBL-EBI]
GO:0043022        [VIEW IN EMBL-EBI]
GO:0043043        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043603        [VIEW IN EMBL-EBI]
GO:0043604        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044877        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070651        [VIEW IN EMBL-EBI]
GO:0070966        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071826        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901566        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1903008        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAAAATCCTCCGCAGGGATTTTGTTCGTGATGGACCAGGAAGCGTTAAACTGATGGCAGAGGACTCGGATGATCTCTGGTTTACTTATAACTTAATTTCCCCTGGAGATAGTGTAATGGCTATCACATCGAGAAAGGTTCTGAAAGAGAGAGGAAATTCTGAACGTGACTCTAAACCTCTGGTGTCCGAACGTCTAACATTGAAGCTGGAAGTACAAGTTGAGGAGGTAAGCTATGACAAAGAAGGTGCTGTTTTGCGCATACTTGGGACGAACATCCTTGAGAACGAGCACGTACCGCTTGGTGCATACCAGAGTTTGGAGCTCACGCTGAAACGACGTTTTCTATTGAGAAAACAAATATGGGACTCATTGGCTATTGATACACTCAACCAGGCAAAACATCATAAATCCAGTGTTAATTTAGCTGTAGTTCTAATGCAAGAAGGACATGCACAAATCTTCCTTGTCGGCAAAAGTGTGGGTCCACCAATCGAAACATCAATTCCTAATCGTAAGCATGCTGGTTACGAGTCTGCGTTGAAGAAATTCTTTGAGAACGTTGTCCGTGCCTTTGTGAAACACGTTGACTTCAGTATCGTTAGGTGTGTAGTGATCGCAAGTCCTGGCTTTACAAAGGATCAGTTTCATCGCCACTTGTTGTCGGAAGCAGAGAGAAGAAAGTTGAGAGATATTACCGAGAACAAATCACGTATACTTCTGGTGCACGCAAACTCCGGATATAGACATAGCCTTGGAGAGGTTCTGAGTGACCCCAAAGTGATGAAGATGATCCAAGATACAAAAGCGTCAAAAGAAGTGAACGCTCTCAGGGATTTCTTCACCATGTTTGCTAAGGATCCATATCGGGCATGCTACGGACCCAAGCATGTGGAGTTTGCTCATCAACAAAAGGCAATCCAAACACTTCTCATTACAGATGAGCTGTTCAAGAACTCTGACGTGAAAAAAAGGAAGAAGTATGTGGATTTTGTGGAGTCGGTGAAACAATTAGGAGGAGAGGCTTTTATATTTTCTTCGATGCATGTTTCAGGTGAACAACTGGCAAAGCATACTGGAATTGCAGCTCTTCTCAGGTTCCCTTTACCAGATCTCGATGACGTTGAGATGTAA
Protein:  
MKILRRDFVRDGPGSVKLMAEDSDDLWFTYNLISPGDSVMAITSRKVLKERGNSERDSKPLVSERLTLKLEVQVEEVSYDKEGAVLRILGTNILENEHVPLGAYQSLELTLKRRFLLRKQIWDSLAIDTLNQAKHHKSSVNLAVVLMQEGHAQIFLVGKSVGPPIETSIPNRKHAGYESALKKFFENVVRAFVKHVDFSIVRCVVIASPGFTKDQFHRHLLSEAERRKLRDITENKSRILLVHANSGYRHSLGEVLSDPKVMKMIQDTKASKEVNALRDFFTMFAKDPYRACYGPKHVEFAHQQKAIQTLLITDELFKNSDVKKRKKYVDFVESVKQLGGEAFIFSSMHVSGEQLAKHTGIAALLRFPLPDLDDVEM